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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16778 and 16779 are separated by 145 nucleotides
16779 and 16780 are separated by 77 nucleotides
16780 and 16781 are separated by 44 nucleotides
16781 and 16782 are separated by 134 nucleotides
mRNA_8410: 16778 - K12761 SNF1 carbon catabolite-derepressing protein kinase, at 1,155,634 to 1,159,160
16778
mRNA_8411: 16779 - KOG2898 Predicted phosphate acyltransferase, contains PlsC domain, at 1,159,306 to 1,160,640
16779
mRNA_8412: 16780 - KOG2504 Monocarboxylate transporter, at 1,160,718 to 1,162,780
16780
mRNA_8413: 16781 - KOG4484 Uncharacterized conserved protein, at 1,162,825 to 1,164,107
16781
mRNA_8414: 16782 - Hypothetical Protein, at 1,164,242 to 1,165,926
16782
Group
Condition
mRNA
_8410
mRNA
_8411
mRNA
_8412
mRNA
_8413
mRNA
_8414
16778
16779
16780
16781
16782
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.8
-0.0
+0.2
-0.7
N.D.
growth on oleic acid
YNB Oleic Acid
-2.7
+0.1
-0.0
-0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.8
-0.0
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.0
+0.0
-1.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.4
+0.0
-1.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
+0.2
+0.3
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.3
+0.0
-0.8
N.D.
auxotrophy
Dropout Complete
+0.1
+0.2
-0.1
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
-0.0
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
+0.2
+0.3
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
+0.0
-0.5
N.D.
growth on ypd
YPD
+0.4
+0.2
+0.0
-0.9
N.D.
auxotrophy
YNB Glucose
+0.1
+0.1
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.1
+0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.4
+0.5
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
+0.3
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.3
+0.3
+0.8
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.5
+0.1
+0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
+0.1
+1.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.4
+0.1
+0.9
N.D.
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