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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16785 and 16786 are separated by 725 nucleotides
16786 and 16787 are separated by 734 nucleotides
16787 and 16788 are separated by 125 nucleotides
16788 and 16789 are separated by 31 nucleotides
mRNA_8417: 16785 - Hypothetical Protein, at 1,171,462 to 1,173,303
16785
mRNA_8418: 16786 - HMMPfam-Cgr1 family-PF03879, at 1,174,029 to 1,174,652
16786
mRNA_8419: 16787 - K14310 NUP205, NUP192 nuclear pore complex protein Nup205, at 1,175,387 to 1,181,685
16787
mRNA_8420: 16788 - SUPERFAMILY--SSF52047, at 1,181,811 to 1,183,583
16788
mRNA_8421: 16789 - K05285 PIGN phosphatidylinositol glycan, class N, at 1,183,615 to 1,187,180
16789
Group
Condition
mRNA
_8417
mRNA
_8418
mRNA
_8419
mRNA
_8420
mRNA
_8421
16785
16786
16787
16788
16789
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-1.9
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
-0.7
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.5
-0.0
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.2
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.3
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.2
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.1
-0.2
+0.1
growth on ypd
YPD
-0.2
N.D.
+0.3
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.0
+0.1
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
+0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.7
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.0
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.3
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.5
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.6
-0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.8
-0.2
-0.2
auxotrophy
YNB Glucose
-0.0
N.D.
+0.5
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.5
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.9
-0.2
-0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.6
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
+0.4
+0.1
+0.1
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