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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16787 and 16788 are separated by 125 nucleotides
16788 and 16789 are separated by 31 nucleotides
16789 and 16790 are separated by 262 nucleotides
16790 and 16791 are separated by 391 nucleotides
mRNA_8419: 16787 - K14310 NUP205, NUP192 nuclear pore complex protein Nup205, at 1,175,387 to 1,181,685
16787
mRNA_8420: 16788 - SUPERFAMILY--SSF52047, at 1,181,811 to 1,183,583
16788
mRNA_8421: 16789 - K05285 PIGN phosphatidylinositol glycan, class N, at 1,183,615 to 1,187,180
16789
mRNA_8422: 16790 - K06675 SMC4 structural maintenance of chromosome 4, at 1,187,443 to 1,193,584
16790
mRNA_8423: 16791 - SUPERFAMILY--SSF52047, at 1,193,976 to 1,195,512
16791
Group
Condition
mRNA
_8419
mRNA
_8420
mRNA
_8421
mRNA
_8422
mRNA
_8423
16787
16788
16789
16790
16791
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
-0.2
-0.2
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.0
+0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.0
+0.0
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.1
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.0
-0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.2
-0.2
N.D.
-0.3
auxotrophy
Dropout Complete
+0.1
-0.2
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.2
-0.3
N.D.
-0.2
auxotrophy
YNB Glucose
+0.5
-0.2
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
+0.0
N.D.
+0.3
growth on ypd
YPD
+0.3
-0.1
-0.1
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.6
+0.0
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.2
-0.2
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.6
-0.0
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.1
-0.0
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.9
-0.2
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.1
N.D.
+0.4
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