Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 16787 and 16788 are separated by 125 nucleotides16788 and 16789 are separated by 31 nucleotides16789 and 16790 are separated by 262 nucleotides16790 and 16791 are separated by 391 nucleotides mRNA_8419: 16787 - K14310 NUP205, NUP192 nuclear pore complex protein Nup205, at 1,175,387 to 1,181,685 16787 mRNA_8420: 16788 - SUPERFAMILY--SSF52047, at 1,181,811 to 1,183,583 16788 mRNA_8421: 16789 - K05285 PIGN phosphatidylinositol glycan, class N, at 1,183,615 to 1,187,180 16789 mRNA_8422: 16790 - K06675 SMC4 structural maintenance of chromosome 4, at 1,187,443 to 1,193,584 16790 mRNA_8423: 16791 - SUPERFAMILY--SSF52047, at 1,193,976 to 1,195,512 16791
Group Condition mRNA_8419 mRNA_8420 mRNA_8421 mRNA_8422 mRNA_8423
16787 16788 16789 16790 16791
ypd buoyancy 40 hrs No Buoyancy Separation -1.9 -0.2 -0.2 N.D. -0.3
growth on oleic acid YNB Oleic Acid -0.3 -0.0 -0.1 N.D. -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.7 -0.0 +0.1 N.D. +0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 -0.0 +0.0 N.D. +0.2
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.2 +0.1 N.D. -0.1
growth on ricinoleic acid YNB Glucose +0.2 -0.2 -0.1 N.D. -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.3 -0.1 -0.1 N.D. -0.3
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -0.0 -0.2 N.D. -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.7 -0.2 -0.2 N.D. -0.3
auxotrophy Dropout Complete +0.1 -0.2 +0.1 N.D. +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.5 +0.2 -0.3 N.D. -0.2
auxotrophy YNB Glucose +0.5 -0.2 +0.0 N.D. -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.0 +0.1 -0.1 N.D. +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.0 +0.0 +0.0 N.D. +0.3
growth on ypd YPD +0.3 -0.1 -0.1 N.D. +0.2
growth on oleic acid YNB Glucose +0.6 +0.0 -0.2 N.D. -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.8 -0.2 -0.2 N.D. -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.6 -0.0 -0.1 N.D. -0.1
auxotrophy YNB Glucose 75mM Methionine +0.5 -0.1 -0.0 N.D. +0.0
auxotrophy YNB Glucose 75mM Arginine +0.9 -0.2 -0.1 N.D. +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 +0.1 +0.1 N.D. +0.4
remove
mRNA_8419
plot
remove
mRNA_8420
plot
remove
mRNA_8421
remove
mRNA_8422
plot
remove
mRNA_8423
plot