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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16795 and 16796 are separated by 48 nucleotides
16796 and 16797 are separated by 180 nucleotides
16797 and 16798 are separated by 529 nucleotides
16798 and 16799 are separated by 235 nucleotides
mRNA_8427: 16795 - K11462 EED polycomb protein EED, at 1,203,788 to 1,206,558
16795
mRNA_8428: 16796 - KOG3808 Uncharacterized conserved protein, at 1,206,607 to 1,207,294
16796
mRNA_8429: 16797 - Hypothetical Protein, at 1,207,475 to 1,209,032
16797
mRNA_8430: 16798 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,209,562 to 1,211,995
16798
mRNA_8431: 16799 - K15105 SLC25A12_13, AGC solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13, at 1,212,231 to 1,215,205
16799
Group
Condition
mRNA
_8427
mRNA
_8428
mRNA
_8429
mRNA
_8430
mRNA
_8431
16795
16796
16797
16798
16799
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.7
-0.2
-0.1
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.9
-0.2
+0.0
-1.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
+0.3
-0.3
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.8
-0.0
-0.2
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.4
+0.3
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-1.4
+0.5
+0.1
+0.0
growth on ypd
YPD
+0.2
-0.5
-0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.4
+0.3
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.5
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
+0.1
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.0
-0.3
-0.1
auxotrophy
Dropout Complete
+0.2
-0.0
-0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.0
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.5
-0.0
+0.0
-0.4
auxotrophy
YNB Glucose
+0.2
+0.2
-0.2
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.8
+0.0
-0.0
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
-0.1
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.3
+0.0
+0.0
+0.4
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