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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16799 and 16800 are separated by 108 nucleotides
16800 and 16801 are separated by 433 nucleotides
16801 and 16802 are separated by 135 nucleotides
16802 and 16803 are separated by 245 nucleotides
mRNA_8431: 16799 - K15105 SLC25A12_13, AGC solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13, at 1,212,231 to 1,215,205
16799
mRNA_8432: 16800 - Hypothetical Protein, at 1,215,314 to 1,218,685
16800
mRNA_8433: 16801 - SUPERFAMILY--SSF54909, at 1,219,119 to 1,219,808
16801
mRNA_8434: 16802 - SUPERFAMILY--SSF55729, at 1,219,944 to 1,220,514
16802
mRNA_8435: 16803 - Hypothetical Protein, at 1,220,760 to 1,221,557
16803
Group
Condition
mRNA
_8431
mRNA
_8432
mRNA
_8433
mRNA
_8434
mRNA
_8435
16799
16800
16801
16802
16803
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.2
-0.7
-0.9
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
-0.2
-0.2
+0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.5
-0.2
-0.1
-0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-0.3
-0.6
-0.2
growth on oleic acid
YNB Oleic Acid
-1.3
-0.1
+0.1
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.0
-0.8
+0.2
-0.2
auxotrophy
YNB Glucose
-0.2
-0.2
-0.4
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.3
-0.2
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
-0.2
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
+0.1
-0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.1
+0.4
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.1
+0.7
-0.8
auxotrophy
Dropout Complete
-0.0
-0.1
-0.7
+0.6
+0.5
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.0
+0.3
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.1
+0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.1
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.0
-0.2
+0.0
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.4
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.2
+0.1
+0.6
growth on ypd
YPD
+0.0
+0.1
+0.4
+0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.3
+0.3
+0.1
+0.2
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