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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16801 and 16802 are separated by 135 nucleotides
16802 and 16803 are separated by 245 nucleotides
16803 and 16804 are separated by 1336 nucleotides
16804 and 16805 are separated by 1544 nucleotides
mRNA_8433: 16801 - SUPERFAMILY--SSF54909, at 1,219,119 to 1,219,808
16801
mRNA_8434: 16802 - SUPERFAMILY--SSF55729, at 1,219,944 to 1,220,514
16802
mRNA_8435: 16803 - Hypothetical Protein, at 1,220,760 to 1,221,557
16803
mRNA_8436: 16804 - K19487 SFP1 transcription factor SFP1, at 1,222,894 to 1,225,231
16804
mRNA_8437: 16805 - K16948 CDC12 cell division control protein 12, at 1,226,776 to 1,229,088
16805
Group
Condition
mRNA
_8433
mRNA
_8434
mRNA
_8435
mRNA
_8436
mRNA
_8437
16801
16802
16803
16804
16805
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.2
-0.2
N.D.
-2.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.9
-0.9
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.6
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.5
+0.2
N.D.
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
+0.3
N.D.
-0.9
auxotrophy
Dropout Complete
-0.7
+0.6
+0.5
N.D.
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.4
-0.6
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
+0.6
N.D.
-0.8
auxotrophy
YNB Glucose
-0.4
+0.1
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.2
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.7
-0.8
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-0.3
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.2
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.5
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
+0.6
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.6
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
+0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.3
+0.3
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.4
-0.4
N.D.
+0.4
growth on ypd
YPD
+0.4
+0.4
-0.1
N.D.
+1.5
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