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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16803 and 16804 are separated by 1336 nucleotides
16804 and 16805 are separated by 1544 nucleotides
16805 and 16806 are separated by 108 nucleotides
16806 and 16807 are separated by 576 nucleotides
mRNA_8435: 16803 - Hypothetical Protein, at 1,220,760 to 1,221,557
16803
mRNA_8436: 16804 - K19487 SFP1 transcription factor SFP1, at 1,222,894 to 1,225,231
16804
mRNA_8437: 16805 - K16948 CDC12 cell division control protein 12, at 1,226,776 to 1,229,088
16805
mRNA_8438: 16806 - K07910 RAB18 Ras-related protein Rab-18, at 1,229,197 to 1,230,748
16806
mRNA_8439: 16807 - KOG4162 Predicted calmodulin-binding protein, at 1,231,325 to 1,234,854
16807
Group
Condition
mRNA
_8435
mRNA
_8436
mRNA
_8437
mRNA
_8438
mRNA
_8439
16803
16804
16805
16806
16807
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-2.3
+0.3
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.3
-1.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.8
N.D.
-0.2
-0.5
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
+0.5
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
N.D.
-0.8
-0.6
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.6
N.D.
-0.1
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.2
-1.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.6
-0.4
-0.1
auxotrophy
Dropout Complete
+0.5
N.D.
-0.8
-0.6
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.5
-0.6
+0.2
auxotrophy
YNB Glucose
+0.2
N.D.
-0.1
-0.9
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-0.9
-0.5
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.8
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.0
-0.8
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.6
N.D.
-0.0
-0.8
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.6
N.D.
-0.4
-0.7
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
+0.4
-0.0
-0.1
growth on oleic acid
YNB Glucose
+0.3
N.D.
-0.2
-0.6
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.1
+0.4
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.1
+0.2
+0.6
growth on ypd
YPD
-0.1
N.D.
+1.5
-0.3
+0.5
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