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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16804 and 16805 are separated by 1544 nucleotides
16805 and 16806 are separated by 108 nucleotides
16806 and 16807 are separated by 576 nucleotides
16807 and 16808 are separated by 134 nucleotides
mRNA_8436: 16804 - K19487 SFP1 transcription factor SFP1, at 1,222,894 to 1,225,231
16804
mRNA_8437: 16805 - K16948 CDC12 cell division control protein 12, at 1,226,776 to 1,229,088
16805
mRNA_8438: 16806 - K07910 RAB18 Ras-related protein Rab-18, at 1,229,197 to 1,230,748
16806
mRNA_8439: 16807 - KOG4162 Predicted calmodulin-binding protein, at 1,231,325 to 1,234,854
16807
mRNA_8440: 16808 - Hypothetical Protein, at 1,234,989 to 1,235,656
16808
Group
Condition
mRNA
_8436
mRNA
_8437
mRNA
_8438
mRNA
_8439
mRNA
_8440
16804
16805
16806
16807
16808
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.8
-0.6
-0.3
-1.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-1.5
-0.1
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-2.3
+0.3
-0.9
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.6
-0.4
-0.1
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-1.0
-0.1
-0.7
growth on oleic acid
YNB Oleic Acid
N.D.
-0.5
-0.6
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.5
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.8
+0.2
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
-0.3
-0.5
-0.3
auxotrophy
Dropout Complete
N.D.
-0.8
-0.6
+0.1
+0.8
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.7
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.9
-0.5
+0.4
+0.5
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.6
+0.6
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-0.8
-0.0
+0.6
growth on ypd
YPD
N.D.
+1.5
-0.3
+0.5
-1.9
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.4
-0.2
-0.1
auxotrophy
YNB Glucose
N.D.
-0.1
-0.9
+0.1
+1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.5
+0.1
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-0.8
+0.6
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
-0.0
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.2
+0.6
+0.8
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