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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16808 and 16809 are separated by 703 nucleotides
16809 and 16810 are separated by 477 nucleotides
16810 and 16811 are separated by 230 nucleotides
16811 and 16812 are separated by 219 nucleotides
mRNA_8440: 16808 - Hypothetical Protein, at 1,234,989 to 1,235,656
16808
mRNA_8441: 16809 - K09274 K09274 HMG box factor, other, at 1,236,360 to 1,239,302
16809
mRNA_8442: 16810 - K19852 KIN1_2 serine/threonine protein kinase KIN1/2, at 1,239,780 to 1,244,729
16810
mRNA_8443: 16811 - Hypothetical Protein, at 1,244,960 to 1,245,436
16811
mRNA_8444: 16812 - HMMPfam-HPP family-PF04982, at 1,245,656 to 1,246,720
16812
Group
Condition
mRNA
_8440
mRNA
_8441
mRNA
_8442
mRNA
_8443
mRNA
_8444
16808
16809
16810
16811
16812
growth on ypd
YPD
-1.9
-0.2
-0.2
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.8
-0.1
+0.2
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.3
+0.2
-0.1
+0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-0.7
+0.7
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
+0.0
+0.4
-1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.3
+0.1
+0.0
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.3
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.2
+0.0
+0.5
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
+0.2
-0.3
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
+0.1
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
-0.4
-0.0
+0.1
+0.4
+0.1
auxotrophy
Dropout Complete
+0.8
+0.1
+0.1
+0.4
-1.2
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.0
+0.5
-0.2
auxotrophy
YNB Glucose
+1.0
-0.1
+0.2
+0.4
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
-0.1
+0.5
+0.0
growth on ricinoleic acid
YNB Glucose
+0.8
-0.0
+0.2
+0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
+0.4
+0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
+0.3
+0.5
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.3
+0.4
+0.4
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.2
+0.1
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.4
+0.1
+0.1
+0.3
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