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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16811 and 16812 are separated by 219 nucleotides
16812 and 16813 are separated by 907 nucleotides
16813 and 16814 are separated by 253 nucleotides
16814 and 16815 are separated by 550 nucleotides
mRNA_8443: 16811 - Hypothetical Protein, at 1,244,960 to 1,245,436
16811
mRNA_8444: 16812 - HMMPfam-HPP family-PF04982, at 1,245,656 to 1,246,720
16812
mRNA_8445: 16813 - KOG0691 Molecular chaperone (DnaJ superfamily), at 1,247,628 to 1,249,851
16813
mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1,250,105 to 1,254,255
16814
mRNA_8447: 16815 - K15429 TRM5, TRMT5 tRNA (guanine37-N1)-methyltransferase, at 1,254,806 to 1,256,692
16815
Group
Condition
mRNA
_8443
mRNA
_8444
mRNA
_8445
mRNA
_8446
mRNA
_8447
16811
16812
16813
16814
16815
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.8
-0.9
-0.4
N.D.
auxotrophy
YNB Glucose
+0.4
-1.1
-0.3
-0.2
N.D.
auxotrophy
Dropout Complete
+0.4
-1.2
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.8
-0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.5
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-1.0
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.6
-0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.5
-0.2
-0.3
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.4
-0.2
+0.0
N.D.
growth on ypd
YPD
+0.4
-0.1
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.0
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.5
-0.2
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.0
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.2
-0.2
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.0
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.0
-0.1
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
-0.0
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.1
+0.0
+0.2
N.D.
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