Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 16812 and 16813 are separated by 907 nucleotides16813 and 16814 are separated by 253 nucleotides16814 and 16815 are separated by 550 nucleotides16815 and 16816 are separated by 1058 nucleotides mRNA_8444: 16812 - HMMPfam-HPP family-PF04982, at 1,245,656 to 1,246,720 16812 mRNA_8445: 16813 - KOG0691 Molecular chaperone (DnaJ superfamily), at 1,247,628 to 1,249,851 16813 mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1,250,105 to 1,254,255 16814 mRNA_8447: 16815 - K15429 TRM5, TRMT5 tRNA (guanine37-N1)-methyltransferase, at 1,254,806 to 1,256,692 16815 mRNA_8448: 16816 - HMMPfam-Protein of unknown function (DUF962)-PF06127, at 1,257,751 to 1,258,571 16816
Group Condition mRNA_8444 mRNA_8445 mRNA_8446 mRNA_8447 mRNA_8448
16812 16813 16814 16815 16816
facs on lipid accumulation Sorted High BODIPY Gate -0.8 -0.9 -0.4 N.D. -0.2
auxotrophy YNB Glucose -1.1 -0.3 -0.2 N.D. -0.0
auxotrophy Dropout Complete -1.2 -0.2 -0.1 N.D. +0.2
auxotrophy YNB Glucose 75mM Methionine -1.0 -0.1 +0.1 N.D. +0.1
auxotrophy YNB Glucose 75mM Arginine -0.8 -0.2 -0.0 N.D. +0.2
growth on oleic acid YNB Glucose -0.2 -0.3 -0.2 N.D. -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.6 -0.1 -0.1 N.D. +0.0
growth on ricinoleic acid YNB Glucose -0.5 -0.2 -0.2 N.D. +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.2 +0.0 N.D. +0.0
growth on ypd YPD -0.1 -0.2 -0.2 N.D. +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.1 -0.1 N.D. -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.2 +0.2 N.D. +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.1 +0.0 N.D. +0.0
growth on oleic acid YNB Oleic Acid +0.1 -0.0 +0.0 N.D. -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 -0.1 +0.1 N.D. +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 +0.0 +0.2 N.D. -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.0 -0.0 -0.1 N.D. +0.2
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.0 +0.0 N.D. +0.0
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.0 -0.0 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy +0.3 -0.1 -0.0 N.D. +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.5 -0.2 +0.3 N.D. -0.1
remove
mRNA_8444
plot
remove
mRNA_8445
plot
remove
mRNA_8446
remove
mRNA_8447
plot
remove
mRNA_8448
plot