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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16813 and 16814 are separated by 253 nucleotides
16814 and 16815 are separated by 550 nucleotides
16815 and 16816 are separated by 1058 nucleotides
16816 and 16817 are separated by 160 nucleotides
mRNA_8445: 16813 - KOG0691 Molecular chaperone (DnaJ superfamily), at 1,247,628 to 1,249,851
16813
mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1,250,105 to 1,254,255
16814
mRNA_8447: 16815 - K15429 TRM5, TRMT5 tRNA (guanine37-N1)-methyltransferase, at 1,254,806 to 1,256,692
16815
mRNA_8448: 16816 - HMMPfam-Protein of unknown function (DUF962)-PF06127, at 1,257,751 to 1,258,571
16816
mRNA_8449: 16817 - KOG0198 MEKK and related serine/threonine protein kinases, at 1,258,732 to 1,261,080
16817
Group
Condition
mRNA
_8445
mRNA
_8446
mRNA
_8447
mRNA
_8448
mRNA
_8449
16813
16814
16815
16816
16817
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.4
N.D.
-0.2
+0.2
auxotrophy
YNB Glucose
-0.3
-0.2
N.D.
-0.0
-0.4
growth on oleic acid
YNB Glucose
-0.3
-0.2
N.D.
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
N.D.
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
N.D.
+0.0
-0.2
auxotrophy
Dropout Complete
-0.2
-0.1
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
-0.0
-0.2
growth on ypd
YPD
-0.2
-0.2
N.D.
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
N.D.
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
N.D.
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
N.D.
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
N.D.
+0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
N.D.
+0.1
+0.3
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