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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16816 and 16817 are separated by 160 nucleotides
16817 and 16818 are separated by 3315 nucleotides
16818 and 16819 are separated by 139 nucleotides
16819 and 16820 are separated by 2390 nucleotides
mRNA_8448: 16816 - HMMPfam-Protein of unknown function (DUF962)-PF06127, at 1,257,751 to 1,258,571
16816
mRNA_8449: 16817 - KOG0198 MEKK and related serine/threonine protein kinases, at 1,258,732 to 1,261,080
16817
mRNA_8450: 16818 - K06670 SCC1, MCD1, RAD21 cohesin complex subunit SCC1, at 1,264,396 to 1,266,785
16818
mRNA_8451: 16819 - Hypothetical Protein, at 1,266,925 to 1,267,155
16819
mRNA_8452: 16820 - Hypothetical Protein, at 1,269,546 to 1,270,646
16820
Group
Condition
mRNA
_8448
mRNA
_8449
mRNA
_8450
mRNA
_8451
mRNA
_8452
16816
16817
16818
16819
16820
auxotrophy
YNB Glucose
-0.0
-0.4
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
N.D.
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
N.D.
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.4
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
N.D.
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.0
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
N.D.
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.1
N.D.
N.D.
-0.1
auxotrophy
Dropout Complete
+0.2
-0.1
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
N.D.
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
N.D.
N.D.
-0.2
growth on ypd
YPD
+0.3
-0.1
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.3
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
N.D.
N.D.
+0.1
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