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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16825 and 16826 are separated by 893 nucleotides
16826 and 16827 are separated by 300 nucleotides
16827 and 16828 are separated by 1515 nucleotides
16828 and 16829 are separated by 305 nucleotides
mRNA_8457: 16825 - K02728 PSMA4 20S proteasome subunit alpha 3, at 1,280,934 to 1,282,715
16825
mRNA_8458: 16826 - Hypothetical Protein, at 1,283,609 to 1,284,091
16826
mRNA_8459: 16827 - SUPERFAMILY--SSF50685, at 1,284,392 to 1,285,740
16827
mRNA_8460: 16828 - KOG0527 HMG-box transcription factor, at 1,287,256 to 1,290,060
16828
mRNA_8461: 16829 - BLAST Copper radical oxidase [Trametes cinnabarina], at 1,290,366 to 1,291,802
16829
Group
Condition
mRNA
_8457
mRNA
_8458
mRNA
_8459
mRNA
_8460
mRNA
_8461
16825
16826
16827
16828
16829
facs on lipid accumulation
Sorted High BODIPY Gate
-4.4
+0.6
-0.2
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-3.6
+0.1
-0.3
+0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.0
+0.2
-0.6
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.5
+0.3
+0.5
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.8
-0.2
+0.3
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.8
+0.1
+0.1
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
+0.0
+0.1
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.3
+0.3
+1.0
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.3
+0.2
+0.7
+0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.3
-0.1
+0.4
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.0
-0.3
+0.0
growth on oleic acid
YNB Oleic Acid
-0.7
+0.1
+0.5
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.5
+0.5
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
+0.3
+0.3
-0.1
growth on ypd
YPD
-0.0
+0.4
-0.1
-0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.0
+0.3
+0.1
+0.0
auxotrophy
YNB Glucose
+0.3
+0.1
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.0
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.8
+0.0
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.9
-0.2
+0.1
+0.2
-0.1
auxotrophy
Dropout Complete
+1.0
+0.1
+0.3
+0.2
+0.0
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