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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16827 and 16828 are separated by 1515 nucleotides
16828 and 16829 are separated by 305 nucleotides
16829 and 16830 are separated by 403 nucleotides
16830 and 16831 are separated by 1122 nucleotides
mRNA_8459: 16827 - SUPERFAMILY--SSF50685, at 1,284,392 to 1,285,740
16827
mRNA_8460: 16828 - KOG0527 HMG-box transcription factor, at 1,287,256 to 1,290,060
16828
mRNA_8461: 16829 - BLAST Copper radical oxidase [Trametes cinnabarina], at 1,290,366 to 1,291,802
16829
mRNA_8462: 16830 - Hypothetical Protein, at 1,292,206 to 1,292,868
16830
mRNA_8463: 16831 - Hypothetical Protein, at 1,293,991 to 1,295,181
16831
Group
Condition
mRNA
_8459
mRNA
_8460
mRNA
_8461
mRNA
_8462
mRNA
_8463
16827
16828
16829
16830
16831
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.0
-0.1
-0.3
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.4
-0.2
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.1
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
+0.5
-0.3
-0.0
growth on oleic acid
YNB Glucose
+0.0
-0.3
+0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
+0.2
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.0
+0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.5
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.3
-0.0
-0.0
auxotrophy
YNB Glucose
+0.2
+0.2
-0.1
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
+0.1
+0.1
+0.1
growth on ypd
YPD
-0.1
-0.1
+0.4
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
-0.1
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
+0.4
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.0
-0.2
+0.3
+0.1
auxotrophy
Dropout Complete
+0.3
+0.2
+0.0
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.5
-0.1
+0.2
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.0
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
+0.2
-0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.4
+0.2
+0.3
-0.2
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