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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16829 and 16830 are separated by 403 nucleotides
16830 and 16831 are separated by 1122 nucleotides
16831 and 16832 are separated by 429 nucleotides
16832 and 16833 are separated by 915 nucleotides
mRNA_8461: 16829 - BLAST Copper radical oxidase [Trametes cinnabarina], at 1,290,366 to 1,291,802
16829
mRNA_8462: 16830 - Hypothetical Protein, at 1,292,206 to 1,292,868
16830
mRNA_8463: 16831 - Hypothetical Protein, at 1,293,991 to 1,295,181
16831
mRNA_8464: 16832 - Hypothetical Protein, at 1,295,611 to 1,296,555
16832
mRNA_8465: 16833 - K00293 LYS9 saccharopine dehydrogenase (NADP+, L-glutamate forming), at 1,297,471 to 1,300,237
16833
Group
Condition
mRNA
_8461
mRNA
_8462
mRNA
_8463
mRNA
_8464
mRNA
_8465
16829
16830
16831
16832
16833
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.3
-0.9
-0.6
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.3
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.4
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose
-0.1
+0.0
+0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.3
-0.0
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.3
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.1
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
-0.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.1
+0.2
-0.0
N.D.
auxotrophy
Dropout Complete
+0.0
+0.2
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
-0.0
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
+0.3
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
+0.4
+0.0
N.D.
growth on ypd
YPD
+0.4
+0.1
-0.1
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.0
+0.3
+0.2
N.D.
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