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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16831 and 16832 are separated by 429 nucleotides
16832 and 16833 are separated by 915 nucleotides
16833 and 16834 are separated by 1971 nucleotides
16834 and 16835 are separated by 257 nucleotides
mRNA_8463: 16831 - Hypothetical Protein, at 1,293,991 to 1,295,181
16831
mRNA_8464: 16832 - Hypothetical Protein, at 1,295,611 to 1,296,555
16832
mRNA_8465: 16833 - K00293 LYS9 saccharopine dehydrogenase (NADP+, L-glutamate forming), at 1,297,471 to 1,300,237
16833
mRNA_8466: 16834 - KOG2112 Lysophospholipase, at 1,302,209 to 1,303,351
16834
mRNA_8467: 16835 - Hypothetical Protein, at 1,303,609 to 1,304,454
16835
Group
Condition
mRNA
_8463
mRNA
_8464
mRNA
_8465
mRNA
_8466
mRNA
_8467
16831
16832
16833
16834
16835
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
-0.2
-2.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.6
N.D.
-0.5
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
-0.4
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
N.D.
-0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.0
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
N.D.
+0.1
+0.3
auxotrophy
YNB Glucose
+0.0
-0.1
N.D.
+0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
N.D.
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
N.D.
+0.4
-0.0
growth on ypd
YPD
-0.1
+0.2
N.D.
+0.3
+0.1
growth on oleic acid
YNB Glucose
+0.2
-0.0
N.D.
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
N.D.
+0.2
+0.6
auxotrophy
Dropout Complete
+0.1
-0.1
N.D.
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.1
N.D.
+0.4
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
N.D.
+0.4
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
N.D.
+0.1
+1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
N.D.
+0.4
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
N.D.
+0.5
+1.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
N.D.
+0.2
+1.3
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