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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16832 and 16833 are separated by 915 nucleotides
16833 and 16834 are separated by 1971 nucleotides
16834 and 16835 are separated by 257 nucleotides
16835 and 16836 are separated by 313 nucleotides
mRNA_8464: 16832 - Hypothetical Protein, at 1,295,611 to 1,296,555
16832
mRNA_8465: 16833 - K00293 LYS9 saccharopine dehydrogenase (NADP+, L-glutamate forming), at 1,297,471 to 1,300,237
16833
mRNA_8466: 16834 - KOG2112 Lysophospholipase, at 1,302,209 to 1,303,351
16834
mRNA_8467: 16835 - Hypothetical Protein, at 1,303,609 to 1,304,454
16835
mRNA_8468: 16836 - K00131 gapN glyceraldehyde-3-phosphate dehydrogenase (NADP+), at 1,304,768 to 1,306,783
16836
Group
Condition
mRNA
_8464
mRNA
_8465
mRNA
_8466
mRNA
_8467
mRNA
_8468
16832
16833
16834
16835
16836
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.2
-2.7
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.4
-0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.4
-0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
-0.5
+0.7
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.1
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.0
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.1
+0.3
-0.2
auxotrophy
YNB Glucose
-0.1
N.D.
+0.3
+0.1
-0.2
auxotrophy
Dropout Complete
-0.1
N.D.
-0.1
+0.6
-0.3
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.0
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.2
+0.6
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
+0.4
-0.0
+0.1
growth on ypd
YPD
+0.2
N.D.
+0.3
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.4
+0.9
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.4
+0.9
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.4
+0.9
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.1
+1.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.5
+1.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
+0.2
+1.3
+0.3
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