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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16836 and 16837 are separated by 197 nucleotides
16837 and 16838 are separated by 169 nucleotides
16838 and 16839 are separated by 51 nucleotides
16839 and 16840 are separated by 481 nucleotides
mRNA_8468: 16836 - K00131 gapN glyceraldehyde-3-phosphate dehydrogenase (NADP+), at 1,304,768 to 1,306,783
16836
mRNA_8469: 16837 - K14654 RIB7, arfC 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase, at 1,306,981 to 1,308,021
16837
mRNA_8470: 16838 - Hypothetical Protein, at 1,308,191 to 1,308,727
16838
mRNA_8471: 16839 - Hypothetical Protein, at 1,308,779 to 1,309,608
16839
mRNA_8472: 16840 - KOG1769 Ubiquitin-like proteins, at 1,310,090 to 1,310,770
16840
Group
Condition
mRNA
_8468
mRNA
_8469
mRNA
_8470
mRNA
_8471
mRNA
_8472
16836
16837
16838
16839
16840
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.1
-3.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-1.6
-0.8
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-2.5
+0.3
+0.6
growth on oleic acid
YNB Glucose
-0.2
N.D.
-1.0
-0.1
-0.1
growth on ypd
YPD
+0.1
N.D.
-1.7
+0.7
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
-0.7
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.5
-0.6
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-1.1
+0.6
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.6
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.1
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.2
-0.8
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.7
+0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
-1.3
+0.3
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.6
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.3
-0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.7
-0.2
-0.2
auxotrophy
Dropout Complete
-0.3
N.D.
+0.0
+0.5
-0.1
auxotrophy
YNB Glucose
-0.2
N.D.
+0.3
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.1
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.4
+0.3
+0.4
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