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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16840 and 16841 are separated by 127 nucleotides
16841 and 16842 are separated by 909 nucleotides
16842 and 16843 are separated by 480 nucleotides
16843 and 16844 are separated by 891 nucleotides
mRNA_8472: 16840 - KOG1769 Ubiquitin-like proteins, at 1,310,090 to 1,310,770
16840
mRNA_8473: 16841 - HMMPfam-Endonuclease/Exonuclease/phosphatase family-PF03372,SUPERFAMILY--SSF56219, at 1,310,898 to 1,312,321
16841
mRNA_8474: 16842 - Hypothetical Protein, at 1,313,231 to 1,316,089
16842
mRNA_8475: 16843 - K03113 EIF1, SUI1 translation initiation factor 1, at 1,316,570 to 1,317,509
16843
mRNA_8476: 16844 - BLAST glycoside hydrolase family 43 protein [Mycena chlorop..., at 1,318,401 to 1,318,799
16844
Group
Condition
mRNA
_8472
mRNA
_8473
mRNA
_8474
mRNA
_8475
mRNA
_8476
16840
16841
16842
16843
16844
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.7
-0.4
N.D.
-1.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
-0.1
N.D.
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.0
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
-0.0
N.D.
-0.1
growth on ypd
YPD
-0.2
+0.2
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
-0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
+0.0
N.D.
+0.2
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.4
+0.3
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
+0.1
N.D.
+0.8
auxotrophy
YNB Glucose
+0.0
-0.2
+0.1
N.D.
+0.7
auxotrophy
Dropout Complete
-0.1
-0.0
+0.4
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.1
-0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.0
N.D.
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
+0.2
N.D.
+0.8
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.4
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.0
+0.2
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
+0.4
-0.1
+0.4
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.0
+0.3
N.D.
+0.7
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