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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16845 and 16846 are separated by 368 nucleotides
16846 and 16847 are separated by 109 nucleotides
16847 and 16848 are separated by 377 nucleotides
16848 and 16849 are separated by 188 nucleotides
mRNA_8477: 16845 - KOG4405 GDP dissociation inhibitor, at 1,319,063 to 1,321,156
16845
mRNA_8478: 16846 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1,321,525 to 1,322,743
16846
mRNA_8479: 16847 - Hypothetical Protein, at 1,322,853 to 1,323,925
16847
mRNA_8480: 16848 - KOG2174 Leptin receptor gene-related protein, at 1,324,303 to 1,324,895
16848
mRNA_8481: 16849 - Hypothetical Protein, at 1,325,084 to 1,327,878
16849
Group
Condition
mRNA
_8477
mRNA
_8478
mRNA
_8479
mRNA
_8480
mRNA
_8481
16845
16846
16847
16848
16849
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.1
-1.6
-0.1
growth on ypd
YPD
N.D.
-0.2
+0.3
-1.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
-1.3
+0.8
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.3
-0.9
+0.0
auxotrophy
YNB Glucose
N.D.
-0.2
+0.0
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.1
-0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
-0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.6
-0.5
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.3
-0.3
-0.1
auxotrophy
Dropout Complete
N.D.
-0.1
+0.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.1
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.1
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.1
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.4
-0.3
+0.4
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.4
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.7
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.2
+0.5
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.6
+0.8
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.0
+0.6
+0.3
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