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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16846 and 16847 are separated by 109 nucleotides
16847 and 16848 are separated by 377 nucleotides
16848 and 16849 are separated by 188 nucleotides
16849 and 16850 are separated by 695 nucleotides
mRNA_8478: 16846 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1,321,525 to 1,322,743
16846
mRNA_8479: 16847 - Hypothetical Protein, at 1,322,853 to 1,323,925
16847
mRNA_8480: 16848 - KOG2174 Leptin receptor gene-related protein, at 1,324,303 to 1,324,895
16848
mRNA_8481: 16849 - Hypothetical Protein, at 1,325,084 to 1,327,878
16849
mRNA_8482: 16850 - K00854 xylB, XYLB xylulokinase, at 1,328,574 to 1,331,754
16850
Group
Condition
mRNA
_8478
mRNA
_8479
mRNA
_8480
mRNA
_8481
mRNA
_8482
16846
16847
16848
16849
16850
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
-1.6
-0.1
+0.1
growth on ypd
YPD
-0.2
+0.3
-1.1
+0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-1.3
+0.8
-0.3
-0.1
auxotrophy
YNB Glucose
-0.2
+0.0
-0.2
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.9
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.2
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.3
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
-0.3
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.6
-0.5
-0.2
+0.1
auxotrophy
Dropout Complete
-0.1
+0.1
-0.2
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.3
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.4
-0.3
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.2
+0.2
+0.0
growth on oleic acid
YNB Glucose
+0.2
+0.4
-0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.3
+0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
+0.1
+0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.7
-0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.1
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.6
+0.8
-0.5
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.5
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.0
+0.6
+0.3
+0.3
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