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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16848 and 16849 are separated by 188 nucleotides
16849 and 16850 are separated by 695 nucleotides
16850 and 16851 are separated by 700 nucleotides
16851 and 16852 are separated by 222 nucleotides
mRNA_8480: 16848 - KOG2174 Leptin receptor gene-related protein, at 1,324,303 to 1,324,895
16848
mRNA_8481: 16849 - Hypothetical Protein, at 1,325,084 to 1,327,878
16849
mRNA_8482: 16850 - K00854 xylB, XYLB xylulokinase, at 1,328,574 to 1,331,754
16850
mRNA_8483: 16851 - BLAST GA28568 gene product from transcript GA28568-RA [Rhiz..., at 1,332,455 to 1,336,946
16851
mRNA_8484: 16852 - KOG0725 Reductases with broad range of substrate specificities, at 1,337,169 to 1,338,536
16852
Group
Condition
mRNA
_8480
mRNA
_8481
mRNA
_8482
mRNA
_8483
mRNA
_8484
16848
16849
16850
16851
16852
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.6
-0.1
+0.1
-0.1
-0.0
growth on ypd
YPD
-1.1
+0.0
-0.0
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.0
-0.0
-0.0
-0.2
auxotrophy
YNB Glucose
-0.2
+0.0
-0.1
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
+0.0
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
+0.1
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
-0.0
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.4
-0.1
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.0
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.5
-0.0
+0.0
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.0
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
+0.1
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.0
+0.1
+0.3
auxotrophy
Dropout Complete
-0.2
+0.1
+0.0
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
+0.0
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.3
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
+0.3
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
+0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.3
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.3
+0.3
+0.2
+0.4
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