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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16849 and 16850 are separated by 695 nucleotides
16850 and 16851 are separated by 700 nucleotides
16851 and 16852 are separated by 222 nucleotides
16852 and 16853 are separated by 223 nucleotides
mRNA_8481: 16849 - Hypothetical Protein, at 1,325,084 to 1,327,878
16849
mRNA_8482: 16850 - K00854 xylB, XYLB xylulokinase, at 1,328,574 to 1,331,754
16850
mRNA_8483: 16851 - BLAST GA28568 gene product from transcript GA28568-RA [Rhiz..., at 1,332,455 to 1,336,946
16851
mRNA_8484: 16852 - KOG0725 Reductases with broad range of substrate specificities, at 1,337,169 to 1,338,536
16852
mRNA_8485: 16853 - K12946 SPCS1 signal peptidase complex subunit 1, at 1,338,760 to 1,339,317
16853
Group
Condition
mRNA
_8481
mRNA
_8482
mRNA
_8483
mRNA
_8484
mRNA
_8485
16849
16850
16851
16852
16853
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.3
-0.2
-0.2
auxotrophy
YNB Glucose
+0.0
-0.1
-0.0
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
-0.0
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
+0.1
+0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
-0.0
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.0
+0.0
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
-0.3
-0.0
+0.3
growth on ypd
YPD
+0.0
-0.0
-0.1
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
+0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
+0.0
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.1
-0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.0
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.0
+0.1
+0.1
auxotrophy
Dropout Complete
+0.1
+0.0
+0.1
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
+0.0
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
+0.1
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.2
+0.4
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
+0.1
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.2
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
+0.2
+0.4
-0.5
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