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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16851 and 16852 are separated by 222 nucleotides
16852 and 16853 are separated by 223 nucleotides
16853 and 16854 are separated by 158 nucleotides
16854 and 16855 are separated by 1419 nucleotides
mRNA_8483: 16851 - BLAST GA28568 gene product from transcript GA28568-RA [Rhiz..., at 1,332,455 to 1,336,946
16851
mRNA_8484: 16852 - KOG0725 Reductases with broad range of substrate specificities, at 1,337,169 to 1,338,536
16852
mRNA_8485: 16853 - K12946 SPCS1 signal peptidase complex subunit 1, at 1,338,760 to 1,339,317
16853
mRNA_8486: 16854 - KOG1162 Predicted small molecule transporter, at 1,339,476 to 1,341,474
16854
mRNA_8487: 16855 - Hypothetical Protein, at 1,342,894 to 1,343,446
16855
Group
Condition
mRNA
_8483
mRNA
_8484
mRNA
_8485
mRNA
_8486
mRNA
_8487
16851
16852
16853
16854
16855
auxotrophy
YNB Glucose
-0.0
-0.2
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.0
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.4
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.4
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
-0.2
N.D.
N.D.
growth on ypd
YPD
-0.1
+0.0
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.4
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
+0.1
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
+0.6
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.4
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.3
+0.3
N.D.
N.D.
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