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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8369 and 8370 are separated by 779 nucleotides
8370 and 8371 are separated by 345 nucleotides
8371 and 8372 are separated by 201 nucleotides
8372 and 8373 are separated by 207 nucleotides
mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1,571 to 2,453
8369
mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3,233 to 7,809
8370
mRNA_3: 8371 - K15161 CCNC, SSN8 cyclin C, at 8,155 to 10,023
8371
mRNA_4: 8372 - K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase, at 10,225 to 11,839
8372
mRNA_5: 8373 - SUPERFAMILY--SSF51695, at 12,047 to 13,694
8373
Group
Condition
mRNA
_1
mRNA
_2
mRNA
_3
mRNA
_4
mRNA
_5
8369
8370
8371
8372
8373
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
-2.3
-0.9
-1.8
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-3.1
-1.4
-1.0
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-2.1
-1.2
-0.8
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-2.1
-1.2
-0.2
-0.4
+0.1
auxotrophy
Dropout Complete
-1.2
-1.5
+0.1
-0.6
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-1.3
-0.2
-0.6
+0.2
auxotrophy
YNB Glucose
-0.8
-1.8
+0.0
+0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-2.3
+0.7
-0.3
-0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.4
-0.6
-1.9
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-1.5
-0.3
-0.3
+0.3
growth on oleic acid
YNB Glucose
-0.7
-0.7
-0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-1.4
+0.5
-0.2
+0.3
growth on ypd
YPD
-0.4
-0.3
-0.2
-0.7
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
-0.1
-0.6
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+1.5
-0.3
-0.9
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.7
+0.7
-0.2
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-1.0
+1.9
+0.0
-0.7
-0.4
growth on ricinoleic acid
YNB Glucose
-0.6
+0.2
+0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
-0.9
+0.8
-0.6
+0.2
growth on oleic acid
YNB Oleic Acid
+0.5
-0.1
+0.2
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.3
+0.3
+0.3
+0.1
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