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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8371 and 8372 are separated by 201 nucleotides
8372 and 8373 are separated by 207 nucleotides
8373 and 8374 are separated by 166 nucleotides
8374 and 8375 are separated by 952 nucleotides
mRNA_3: 8371 - K15161 CCNC, SSN8 cyclin C, at 8,155 to 10,023
8371
mRNA_4: 8372 - K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase, at 10,225 to 11,839
8372
mRNA_5: 8373 - SUPERFAMILY--SSF51695, at 12,047 to 13,694
8373
mRNA_6: 8374 - SUPERFAMILY--SSF47676, at 13,861 to 19,221
8374
mRNA_7: 8375 - HMMPfam-LIM-domain binding protein-PF01803,PRINTS-Proline rich extensin signature-PR01217, at 20,174 to 22,955
8375
Group
Condition
mRNA
_3
mRNA
_4
mRNA
_5
mRNA
_6
mRNA
_7
8371
8372
8373
8374
8375
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-1.8
+0.2
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-1.9
+0.4
+0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.9
-0.3
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.6
+0.1
+0.1
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
+0.1
-0.4
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.2
-0.1
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.1
+0.1
+0.0
-0.8
auxotrophy
Dropout Complete
+0.1
-0.6
-0.2
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.6
+0.2
-0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.7
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.3
+0.0
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.5
+0.3
-0.1
-0.4
growth on ypd
YPD
-0.2
-0.7
+0.4
-0.2
+0.3
auxotrophy
YNB Glucose
+0.0
+0.2
+0.3
-0.3
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.3
+0.2
-0.0
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.0
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
-0.0
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
+0.3
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
-0.6
+0.2
+0.5
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.2
+0.3
+0.1
+0.0
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