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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8373 and 8374 are separated by 166 nucleotides
8374 and 8375 are separated by 952 nucleotides
8375 and 8376 are separated by 222 nucleotides
8376 and 8377 are separated by 1976 nucleotides
mRNA_5: 8373 - SUPERFAMILY--SSF51695, at 12,047 to 13,694
8373
mRNA_6: 8374 - SUPERFAMILY--SSF47676, at 13,861 to 19,221
8374
mRNA_7: 8375 - HMMPfam-LIM-domain binding protein-PF01803,PRINTS-Proline rich extensin signature-PR01217, at 20,174 to 22,955
8375
mRNA_8: 8376 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 23,178 to 26,734
8376
mRNA_9: 8377 - Hypothetical Protein, at 28,711 to 29,599
8377
Group
Condition
mRNA
_5
mRNA
_6
mRNA
_7
mRNA
_8
mRNA
_9
8373
8374
8375
8376
8377
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
-1.1
-0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.4
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.4
-0.6
+0.1
+0.2
auxotrophy
Dropout Complete
-0.2
-0.2
-0.5
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.2
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
-0.4
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
-0.1
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
-0.4
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.0
-0.8
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.3
-0.4
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.0
+0.1
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.0
+0.1
+0.0
-0.2
auxotrophy
YNB Glucose
+0.3
-0.3
-0.5
+0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
-0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.3
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.0
-0.0
-0.2
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.4
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
-0.6
+0.1
+0.1
growth on ypd
YPD
+0.4
-0.2
+0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
+0.0
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
-0.0
-0.1
+0.3
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