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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8379 and 8380 are separated by 458 nucleotides
8380 and 8381 are separated by 362 nucleotides
8381 and 8382 are separated by 1636 nucleotides
8382 and 8383 are separated by 1069 nucleotides
mRNA_11: 8379 - Hypothetical Protein, at 31,186 to 32,050
8379
mRNA_12: 8380 - K12757 MYL12 myosin regulatory light chain 12, at 32,509 to 33,351
8380
mRNA_13: 8381 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 33,714 to 35,045
8381
mRNA_14: 8382 - K07199 PRKAB 5'-AMP-activated protein kinase, regulatory beta subunit, at 36,682 to 38,243
8382
mRNA_15: 8383 - K02321 POLA2 DNA polymerase alpha subunit B, at 39,313 to 41,292
8383
Group
Condition
mRNA
_11
mRNA
_12
mRNA
_13
mRNA
_14
mRNA
_15
8379
8380
8381
8382
8383
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
-1.8
-2.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.6
-2.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
-0.6
-0.4
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
-0.9
-0.9
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
-0.3
-1.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.3
+0.1
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
-0.0
-1.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
+0.1
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.3
-0.3
-1.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
+0.4
-0.8
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
+0.4
-0.5
-0.0
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.1
-1.0
N.D.
growth on ypd
YPD
+0.1
-0.1
-0.0
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.4
+0.0
-0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.2
-0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.0
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
+0.5
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
-0.4
+0.5
N.D.
auxotrophy
Dropout Complete
-0.0
+0.4
+0.0
+0.0
N.D.
auxotrophy
YNB Glucose
-0.1
+0.3
-0.3
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
-0.2
+0.3
N.D.
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