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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8384 and 8385 are separated by 2737 nucleotides
8385 and 8386 are separated by 330 nucleotides
8386 and 8387 are separated by 379 nucleotides
8387 and 8388 are separated by 376 nucleotides
mRNA_16: 8384 - K03407 cheA two-component system, chemotaxis family, sensor kinase CheA, at 41,535 to 45,882
8384
mRNA_17: 8385 - K00856 E2.7.1.20, ADK adenosine kinase, at 48,620 to 50,142
8385
mRNA_18: 8386 - KOG1515 Arylacetamide deacetylase, at 50,473 to 51,921
8386
mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52,301 to 54,654
8387
mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55,031 to 59,299
8388
Group
Condition
mRNA
_16
mRNA
_17
mRNA
_18
mRNA
_19
mRNA
_20
8384
8385
8386
8387
8388
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.0
-0.2
-0.6
growth on ypd
YPD
-0.1
N.D.
-0.2
-0.3
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.1
+0.0
-0.4
auxotrophy
Dropout Complete
+0.2
N.D.
-0.2
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.1
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
N.D.
-0.4
+0.1
-0.3
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
-0.0
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.1
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.3
+0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.3
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.1
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.0
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose
+0.3
N.D.
+0.1
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.0
+0.3
-0.1
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