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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8385 and 8386 are separated by 330 nucleotides
8386 and 8387 are separated by 379 nucleotides
8387 and 8388 are separated by 376 nucleotides
8388 and 8389 are separated by 220 nucleotides
mRNA_17: 8385 - K00856 E2.7.1.20, ADK adenosine kinase, at 48,620 to 50,142
8385
mRNA_18: 8386 - KOG1515 Arylacetamide deacetylase, at 50,473 to 51,921
8386
mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52,301 to 54,654
8387
mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55,031 to 59,299
8388
mRNA_21: 8389 - SUPERFAMILY--SSF51045, at 59,520 to 60,624
8389
Group
Condition
mRNA
_17
mRNA
_18
mRNA
_19
mRNA
_20
mRNA
_21
8385
8386
8387
8388
8389
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.1
+0.1
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
+0.1
-0.3
-0.4
auxotrophy
Dropout Complete
N.D.
-0.2
-0.4
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.3
-0.1
-0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-0.2
-0.6
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.2
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
-0.0
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.1
-0.2
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.2
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.0
-0.4
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.1
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.2
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.0
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.0
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.1
+0.0
+0.4
auxotrophy
YNB Glucose
N.D.
+0.1
-0.3
+0.2
+0.5
growth on ypd
YPD
N.D.
-0.2
-0.3
-0.2
+1.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.1
-0.1
+0.6
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