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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8391 and 8392 are separated by 964 nucleotides
8392 and 8393 are separated by 1111 nucleotides
8393 and 8394 are separated by 561 nucleotides
8394 and 8395 are separated by 449 nucleotides
mRNA_23: 8391 - K02938 RP-L8e, RPL8 large subunit ribosomal protein L8e, at 62,374 to 63,560
8391
mRNA_24: 8392 - Hypothetical Protein, at 64,525 to 65,394
8392
mRNA_25: 8393 - Hypothetical Protein, at 66,506 to 67,548
8393
mRNA_26: 8394 - K04499 RUVBL1, RVB1, INO80H RuvB-like protein 1 (pontin 52), at 68,110 to 69,853
8394
mRNA_27: 8395 - K00088 IMPDH, guaB IMP dehydrogenase, at 70,303 to 72,461
8395
Group
Condition
mRNA
_23
mRNA
_24
mRNA
_25
mRNA
_26
mRNA
_27
8391
8392
8393
8394
8395
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-1.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-1.5
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
-0.7
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.8
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.9
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.6
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.9
N.D.
N.D.
growth on ypd
YPD
N.D.
-0.2
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
N.D.
-0.3
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.8
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
+0.6
N.D.
N.D.
auxotrophy
Dropout Complete
N.D.
+0.1
+0.7
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.6
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+0.6
N.D.
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.8
+0.2
N.D.
N.D.
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