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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8397 and 8398 are separated by 247 nucleotides
8398 and 8399 are separated by 84 nucleotides
8399 and 8400 are separated by 294 nucleotides
8400 and 8401 are separated by 355 nucleotides
mRNA_29: 8397 - HMMPfam-Swi5-PF07061, at 74,095 to 74,821
8397
mRNA_30: 8398 - KOG2798 Putative trehalase, at 75,069 to 76,780
8398
mRNA_31: 8399 - K01520 dut, DUT dUTP pyrophosphatase, at 76,865 to 77,832
8399
mRNA_32: 8400 - HMMPfam-Pre-rRNA-processing protein TSR2-PF10273, at 78,127 to 78,849
8400
mRNA_33: 8401 - HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371, at 79,205 to 81,384
8401
Group
Condition
mRNA
_29
mRNA
_30
mRNA
_31
mRNA
_32
mRNA
_33
8397
8398
8399
8400
8401
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.2
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.7
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.5
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
N.D.
N.D.
-0.6
auxotrophy
YNB Glucose
-0.1
-0.6
N.D.
N.D.
+0.6
auxotrophy
Dropout Complete
-0.5
-0.5
N.D.
N.D.
+0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.6
N.D.
N.D.
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.4
N.D.
N.D.
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.2
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.5
N.D.
N.D.
+0.6
growth on oleic acid
YNB Glucose
-0.1
-0.5
N.D.
N.D.
+0.9
growth on ricinoleic acid
YNB Glucose
-0.0
-0.5
N.D.
N.D.
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
N.D.
N.D.
+0.9
growth on ypd
YPD
+0.1
+0.1
N.D.
N.D.
+0.7
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
N.D.
+1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.6
N.D.
N.D.
+1.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.2
N.D.
N.D.
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
N.D.
N.D.
+2.1
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