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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8400 and 8401 are separated by 355 nucleotides
8401 and 8402 are separated by 145 nucleotides
8402 and 8403 are separated by 657 nucleotides
8403 and 8404 are separated by 170 nucleotides
mRNA_32: 8400 - HMMPfam-Pre-rRNA-processing protein TSR2-PF10273, at 78,127 to 78,849
8400
mRNA_33: 8401 - HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371, at 79,205 to 81,384
8401
mRNA_34: 8402 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 81,530 to 84,325
8402
mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84,983 to 86,013
8403
mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86,184 to 90,147
8404
Group
Condition
mRNA
_32
mRNA
_33
mRNA
_34
mRNA
_35
mRNA
_36
8400
8401
8402
8403
8404
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.7
-3.5
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-2.2
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.6
-2.2
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.8
-3.1
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
-1.1
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-1.5
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-1.1
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+2.1
-3.0
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.1
-0.0
-0.0
auxotrophy
Dropout Complete
N.D.
+0.8
-1.3
-0.0
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+1.0
-1.0
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.6
-0.8
+0.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.9
-1.2
-0.0
+0.2
auxotrophy
YNB Glucose
N.D.
+0.6
-1.1
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+1.3
-1.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+1.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.7
-0.1
+0.3
growth on ypd
YPD
N.D.
+0.7
+0.1
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
+1.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.9
+0.9
+0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+2.3
+0.1
-0.0
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