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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8402 and 8403 are separated by 657 nucleotides
8403 and 8404 are separated by 170 nucleotides
8404 and 8405 are separated by 760 nucleotides
8405 and 8406 are separated by 409 nucleotides
mRNA_34: 8402 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 81,530 to 84,325
8402
mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84,983 to 86,013
8403
mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86,184 to 90,147
8404
mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90,908 to 93,083
8405
mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93,493 to 94,436
8406
Group
Condition
mRNA
_34
mRNA
_35
mRNA
_36
mRNA
_37
mRNA
_38
8402
8403
8404
8405
8406
growth on ricinoleic acid
YNB Methylricinoleic Acid
-3.1
-0.2
-0.1
-0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-3.5
-0.2
+0.2
+0.6
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.0
+0.1
+0.3
+0.5
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-2.2
-0.1
+0.0
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-2.2
-0.1
-0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-1.0
-0.2
+0.1
+0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.0
-0.3
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-1.1
-0.1
+0.2
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
+0.2
+0.2
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-1.5
+0.3
+0.0
+0.2
+0.1
auxotrophy
Dropout Complete
-1.3
-0.0
+0.3
+0.2
+0.0
auxotrophy
YNB Glucose
-1.1
+0.2
+0.3
+0.3
+0.0
growth on oleic acid
YNB Oleic Acid
-1.1
+0.2
+0.1
+0.4
+0.1
growth on oleic acid
YNB Glucose
-1.2
-0.0
+0.2
+0.6
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.8
+0.0
+0.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
-0.2
-0.1
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.1
+0.3
-0.1
-0.1
growth on ypd
YPD
+0.1
+0.2
+0.5
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
-0.2
+0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
+0.0
+0.3
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+2.3
+0.1
-0.0
+0.0
-0.1
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