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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8403 and 8404 are separated by 170 nucleotides
8404 and 8405 are separated by 760 nucleotides
8405 and 8406 are separated by 409 nucleotides
8406 and 8407 are separated by 428 nucleotides
mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84,983 to 86,013
8403
mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86,184 to 90,147
8404
mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90,908 to 93,083
8405
mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93,493 to 94,436
8406
mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94,865 to 95,759
8407
Group
Condition
mRNA
_35
mRNA
_36
mRNA
_37
mRNA
_38
mRNA
_39
8403
8404
8405
8406
8407
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.0
-0.3
-0.7
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.1
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
-0.4
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.1
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
+0.2
-0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
+0.0
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.1
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
-0.2
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.1
+0.2
-0.1
auxotrophy
Dropout Complete
-0.0
+0.3
+0.2
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
+0.5
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.0
+0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
+0.4
+0.2
-0.0
growth on ypd
YPD
+0.2
+0.5
+0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.3
+0.3
+0.1
+0.1
auxotrophy
YNB Glucose
+0.2
+0.3
+0.3
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
+0.6
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
+0.4
+0.1
+0.4
growth on oleic acid
YNB Glucose
-0.0
+0.2
+0.6
+0.3
+0.3
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