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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8404 and 8405 are separated by 760 nucleotides
8405 and 8406 are separated by 409 nucleotides
8406 and 8407 are separated by 428 nucleotides
8407 and 8408 are separated by 368 nucleotides
mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86,184 to 90,147
8404
mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90,908 to 93,083
8405
mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93,493 to 94,436
8406
mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94,865 to 95,759
8407
mRNA_40: 8408 - Hypothetical Protein, at 96,128 to 97,227
8408
Group
Condition
mRNA
_36
mRNA
_37
mRNA
_38
mRNA
_39
mRNA
_40
8404
8405
8406
8407
8408
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.3
-0.7
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.5
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.0
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
+0.1
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
-0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.1
+0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
+0.0
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.1
-0.0
-0.1
auxotrophy
Dropout Complete
+0.3
+0.2
+0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.3
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.2
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.4
+0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.5
-0.4
+0.1
+0.1
auxotrophy
YNB Glucose
+0.3
+0.3
+0.0
+0.1
-0.1
growth on ypd
YPD
+0.5
+0.4
-0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.1
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
+0.1
+0.4
+0.1
growth on oleic acid
YNB Glucose
+0.2
+0.6
+0.3
+0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.6
+0.3
+0.2
+0.2
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