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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8405 and 8406 are separated by 409 nucleotides
8406 and 8407 are separated by 428 nucleotides
8407 and 8408 are separated by 368 nucleotides
8408 and 8409 are separated by 327 nucleotides
mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90,908 to 93,083
8405
mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93,493 to 94,436
8406
mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94,865 to 95,759
8407
mRNA_40: 8408 - Hypothetical Protein, at 96,128 to 97,227
8408
mRNA_41: 8409 - K03125 TAF1 transcription initiation factor TFIID subunit 1, at 97,555 to 101,757
8409
Group
Condition
mRNA
_37
mRNA
_38
mRNA
_39
mRNA
_40
mRNA
_41
8405
8406
8407
8408
8409
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.7
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
-0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
+0.0
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.0
+0.0
N.D.
auxotrophy
Dropout Complete
+0.2
+0.0
-0.1
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
-0.2
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
+0.2
+0.1
N.D.
growth on ypd
YPD
+0.4
-0.2
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.4
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose
+0.3
+0.0
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
+0.1
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
+0.4
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.6
+0.3
+0.3
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.3
+0.2
+0.2
N.D.
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