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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8407 and 8408 are separated by 368 nucleotides
8408 and 8409 are separated by 327 nucleotides
8409 and 8410 are separated by 199 nucleotides
8410 and 8411 are separated by 191 nucleotides
mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94,865 to 95,759
8407
mRNA_40: 8408 - Hypothetical Protein, at 96,128 to 97,227
8408
mRNA_41: 8409 - K03125 TAF1 transcription initiation factor TFIID subunit 1, at 97,555 to 101,757
8409
mRNA_42: 8410 - K09494 CCT2 T-complex protein 1 subunit beta, at 101,957 to 104,570
8410
mRNA_43: 8411 - K05609 UCHL3, YUH1 ubiquitin carboxyl-terminal hydrolase L3, at 104,762 to 105,972
8411
Group
Condition
mRNA
_39
mRNA
_40
mRNA
_41
mRNA
_42
mRNA
_43
8407
8408
8409
8410
8411
auxotrophy
Dropout Complete
-0.1
-0.1
N.D.
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
N.D.
N.D.
-0.4
auxotrophy
YNB Glucose
+0.1
-0.1
N.D.
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
N.D.
N.D.
-0.2
growth on ypd
YPD
-0.1
+0.2
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
N.D.
N.D.
+0.4
growth on oleic acid
YNB Glucose
+0.3
+0.0
N.D.
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
N.D.
N.D.
-0.2
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