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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8409 and 8410 are separated by 199 nucleotides
8410 and 8411 are separated by 191 nucleotides
8411 and 8412 are separated by 224 nucleotides
8412 and 8413 are separated by 170 nucleotides
mRNA_41: 8409 - K03125 TAF1 transcription initiation factor TFIID subunit 1, at 97,555 to 101,757
8409
mRNA_42: 8410 - K09494 CCT2 T-complex protein 1 subunit beta, at 101,957 to 104,570
8410
mRNA_43: 8411 - K05609 UCHL3, YUH1 ubiquitin carboxyl-terminal hydrolase L3, at 104,762 to 105,972
8411
mRNA_44: 8412 - Hypothetical Protein, at 106,197 to 108,340
8412
mRNA_45: 8413 - SUPERFAMILY--SSF51445, at 108,511 to 110,701
8413
Group
Condition
mRNA
_41
mRNA
_42
mRNA
_43
mRNA
_44
mRNA
_45
8409
8410
8411
8412
8413
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.3
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.4
-0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
-0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.3
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.2
-0.3
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.0
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.5
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.2
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.6
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.0
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
-0.4
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.2
+0.4
growth on ypd
YPD
N.D.
N.D.
+0.0
+0.3
+0.4
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