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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8410 and 8411 are separated by 191 nucleotides
8411 and 8412 are separated by 224 nucleotides
8412 and 8413 are separated by 170 nucleotides
8413 and 8414 are separated by 372 nucleotides
mRNA_42: 8410 - K09494 CCT2 T-complex protein 1 subunit beta, at 101,957 to 104,570
8410
mRNA_43: 8411 - K05609 UCHL3, YUH1 ubiquitin carboxyl-terminal hydrolase L3, at 104,762 to 105,972
8411
mRNA_44: 8412 - Hypothetical Protein, at 106,197 to 108,340
8412
mRNA_45: 8413 - SUPERFAMILY--SSF51445, at 108,511 to 110,701
8413
mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111,074 to 114,249
8414
Group
Condition
mRNA
_42
mRNA
_43
mRNA
_44
mRNA
_45
mRNA
_46
8410
8411
8412
8413
8414
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
-0.3
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.2
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
-0.4
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.4
+0.1
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.5
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.4
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.0
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.2
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
-0.0
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.3
+0.2
+0.1
auxotrophy
Dropout Complete
N.D.
-0.6
+0.3
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.2
+0.1
-0.0
auxotrophy
YNB Glucose
N.D.
-0.5
+0.3
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.4
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.1
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
-0.3
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
-0.1
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.3
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.2
+0.4
-0.0
growth on ypd
YPD
N.D.
+0.0
+0.3
+0.4
-0.0
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