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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8412 and 8413 are separated by 170 nucleotides
8413 and 8414 are separated by 372 nucleotides
8414 and 8415 are separated by 339 nucleotides
8415 and 8416 are separated by 748 nucleotides
mRNA_44: 8412 - Hypothetical Protein, at 106,197 to 108,340
8412
mRNA_45: 8413 - SUPERFAMILY--SSF51445, at 108,511 to 110,701
8413
mRNA_46: 8414 - HMMPfam-Protein of unknown function (DUF3292)-PF11696, at 111,074 to 114,249
8414
mRNA_47: 8415 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 114,589 to 115,599
8415
mRNA_48: 8416 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 116,348 to 117,395
8416
Group
Condition
mRNA
_44
mRNA
_45
mRNA
_46
mRNA
_47
mRNA
_48
8412
8413
8414
8415
8416
growth on oleic acid
YNB Glucose
-0.5
-0.1
-0.1
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
-0.1
+0.3
-1.1
auxotrophy
Dropout Complete
+0.3
+0.2
-0.1
-0.2
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.0
-0.1
+0.3
-0.5
auxotrophy
YNB Glucose
+0.3
+0.1
+0.0
+0.1
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.5
-0.1
+0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.4
-0.2
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.2
+0.0
-0.1
-0.1
growth on ypd
YPD
+0.3
+0.4
-0.0
-0.0
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
+0.1
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
-0.1
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
+0.0
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.0
+0.1
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
+0.0
+0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.3
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.0
-0.1
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
+0.2
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.4
-0.0
-0.1
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
+0.2
+0.5
+0.7
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