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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8416 and 8417 are separated by 305 nucleotides
8417 and 8418 are separated by 412 nucleotides
8418 and 8419 are separated by 231 nucleotides
8419 and 8420 are separated by 53 nucleotides
mRNA_48: 8416 - HMMPfam-Serine hydrolase (FSH1)-PF03959,SUPERFAMILY--SSF53474, at 116,348 to 117,395
8416
mRNA_49: 8417 - K03133 TAF9B, TAF9 transcription initiation factor TFIID subunit 9B, at 117,701 to 118,562
8417
mRNA_50: 8418 - KOG1611 Predicted short chain-type dehydrogenase, at 118,975 to 119,840
8418
mRNA_51: 8419 - K10392 KIF1 kinesin family member 1, at 120,072 to 126,065
8419
mRNA_52: 8420 - Hypothetical Protein, at 126,119 to 126,700
8420
Group
Condition
mRNA
_48
mRNA
_49
mRNA
_50
mRNA
_51
mRNA
_52
8416
8417
8418
8419
8420
auxotrophy
Dropout Complete
-0.9
-0.1
-0.2
-0.4
-0.5
auxotrophy
YNB Glucose
-1.0
-0.2
-0.2
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.6
-0.6
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-1.1
+0.1
-0.1
-0.6
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.4
-0.1
-0.9
-0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.2
-0.0
-0.5
-0.3
growth on oleic acid
YNB Glucose
-0.4
-0.0
-0.1
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.5
-0.2
-0.7
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.0
-0.3
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.7
+0.5
+0.4
-0.8
growth on ypd
YPD
-0.8
+0.3
+0.2
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.1
-0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.4
-0.4
-0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.5
+0.2
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.3
+0.0
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
+0.1
+0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.5
-0.5
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.3
-0.0
+0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.7
-0.2
-0.0
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
+0.0
-0.2
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.0
+0.1
+0.2
+0.3
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