Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 8417 and 8418 are separated by 412 nucleotides8418 and 8419 are separated by 231 nucleotides8419 and 8420 are separated by 53 nucleotides8420 and 8421 are separated by 210 nucleotides mRNA_49: 8417 - K03133 TAF9B, TAF9 transcription initiation factor TFIID subunit 9B, at 117,701 to 118,562 8417 mRNA_50: 8418 - KOG1611 Predicted short chain-type dehydrogenase, at 118,975 to 119,840 8418 mRNA_51: 8419 - K10392 KIF1 kinesin family member 1, at 120,072 to 126,065 8419 mRNA_52: 8420 - Hypothetical Protein, at 126,119 to 126,700 8420 mRNA_53: 8421 - K03014 RPB6, POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2, at 126,911 to 127,593 8421
Group Condition mRNA_49 mRNA_50 mRNA_51 mRNA_52 mRNA_53
8417 8418 8419 8420 8421
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.6 -0.6 -0.1 -0.4 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -0.1 -0.9 -0.7 N.D.
auxotrophy Dropout Complete -0.1 -0.2 -0.4 -0.5 N.D.
auxotrophy YNB Glucose -0.2 -0.2 -0.4 -0.3 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.1 -0.6 -0.3 N.D.
growth on ricinoleic acid YNB Glucose +0.5 -0.2 -0.7 -0.4 N.D.
growth on oleic acid YNB Glucose -0.0 -0.1 -0.4 -0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.7 +0.5 +0.4 -0.8 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 -0.4 -0.6 -0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.2 -0.0 -0.5 -0.3 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.5 +0.2 -0.0 -0.3 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.0 -0.1 -0.3 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.3 +0.0 +0.1 -0.3 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.0 -0.2 +0.2 -0.5 N.D.
growth on oleic acid YNB Oleic Acid -0.1 +0.1 -0.3 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 -0.3 -0.1 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 +0.1 +0.2 +0.0 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.5 -0.5 +0.2 +0.1 N.D.
growth on ypd YPD +0.3 +0.2 +0.0 -0.2 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.3 -0.0 +0.3 +0.0 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 +0.1 +0.2 +0.3 N.D.
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