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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8422 and 8423 are separated by 108 nucleotides
8423 and 8424 are separated by 135 nucleotides
8424 and 8425 are separated by 361 nucleotides
8425 and 8426 are separated by 663 nucleotides
mRNA_54: 8422 - KOG1505 Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases, at 128,047 to 129,356
8422
mRNA_55: 8423 - HMMPfam-Endonuclease/Exonuclease/phosphatase family-PF03372,SUPERFAMILY--SSF56219, at 129,465 to 130,938
8423
mRNA_56: 8424 - K09499 CCT7 T-complex protein 1 subunit eta, at 131,074 to 133,280
8424
mRNA_57: 8425 - K15176 CTR9 RNA polymerase-associated protein CTR9, at 133,642 to 138,012
8425
mRNA_58: 8426 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 138,676 to 140,962
8426
Group
Condition
mRNA
_54
mRNA
_55
mRNA
_56
mRNA
_57
mRNA
_58
8422
8423
8424
8425
8426
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.5
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
N.D.
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose
-0.3
+0.1
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.3
N.D.
N.D.
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
N.D.
N.D.
+0.0
auxotrophy
Dropout Complete
-0.1
-0.0
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.5
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.4
N.D.
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.4
N.D.
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.5
N.D.
N.D.
+0.0
growth on ypd
YPD
+0.3
+0.4
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.5
N.D.
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.7
-0.1
N.D.
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.8
-0.0
N.D.
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.7
N.D.
N.D.
+0.4
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