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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8424 and 8425 are separated by 361 nucleotides
8425 and 8426 are separated by 663 nucleotides
8426 and 8427 are separated by 260 nucleotides
8427 and 8428 are separated by 306 nucleotides
mRNA_56: 8424 - K09499 CCT7 T-complex protein 1 subunit eta, at 131,074 to 133,280
8424
mRNA_57: 8425 - K15176 CTR9 RNA polymerase-associated protein CTR9, at 133,642 to 138,012
8425
mRNA_58: 8426 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 138,676 to 140,962
8426
mRNA_59: 8427 - Hypothetical Protein, at 141,223 to 142,116
8427
mRNA_60: 8428 - Hypothetical Protein, at 142,423 to 142,761
8428
Group
Condition
mRNA
_56
mRNA
_57
mRNA
_58
mRNA
_59
mRNA
_60
8424
8425
8426
8427
8428
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
-0.3
-0.9
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.2
-0.3
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.0
-0.3
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.2
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
-0.1
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
-0.8
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.8
+0.0
+0.2
auxotrophy
YNB Glucose
N.D.
N.D.
+0.0
+0.0
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.0
-0.0
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.0
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
-0.1
-0.1
auxotrophy
Dropout Complete
N.D.
N.D.
+0.2
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.2
-0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.2
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.0
-0.3
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.4
+0.4
-0.1
growth on ypd
YPD
N.D.
N.D.
+0.0
+0.5
+0.7
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