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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8426 and 8427 are separated by 260 nucleotides
8427 and 8428 are separated by 306 nucleotides
8428 and 8429 are separated by 609 nucleotides
8429 and 8430 are separated by 665 nucleotides
mRNA_58: 8426 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 138,676 to 140,962
8426
mRNA_59: 8427 - Hypothetical Protein, at 141,223 to 142,116
8427
mRNA_60: 8428 - Hypothetical Protein, at 142,423 to 142,761
8428
mRNA_61: 8429 - SUPERFAMILY--SSF52047, at 143,371 to 144,965
8429
mRNA_62: 8430 - HMMPfam-HPP family-PF04982, at 145,631 to 146,829
8430
Group
Condition
mRNA
_58
mRNA
_59
mRNA
_60
mRNA
_61
mRNA
_62
8426
8427
8428
8429
8430
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.8
-0.0
-1.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.3
-0.9
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.8
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
-1.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
-0.9
+0.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.0
+0.2
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.3
-0.8
+0.7
-0.0
auxotrophy
YNB Glucose
+0.0
+0.0
-0.5
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.0
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.0
+0.1
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.0
-0.2
+0.0
growth on oleic acid
YNB Glucose
+0.3
-0.3
-0.2
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
-0.2
+0.3
+0.1
auxotrophy
Dropout Complete
+0.2
+0.1
-0.1
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
+0.3
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
+0.6
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.1
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.4
-0.1
+0.5
-0.4
growth on ypd
YPD
+0.0
+0.5
+0.7
-0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.3
+0.7
+0.4
+0.2
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