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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8429 and 8430 are separated by 665 nucleotides
8430 and 8431 are separated by 251 nucleotides
8431 and 8432 are separated by 373 nucleotides
8432 and 8433 are separated by 147 nucleotides
mRNA_61: 8429 - SUPERFAMILY--SSF52047, at 143,371 to 144,965
8429
mRNA_62: 8430 - HMMPfam-HPP family-PF04982, at 145,631 to 146,829
8430
mRNA_63: 8431 - K01800 maiA, GSTZ1 maleylacetoacetate isomerase, at 147,081 to 148,199
8431
mRNA_64: 8432 - HMMPfam-Transcription initiation factor TFIID component TAF4 family-PF05236, at 148,573 to 150,625
8432
mRNA_65: 8433 - K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1, at 150,773 to 154,577
8433
Group
Condition
mRNA
_61
mRNA
_62
mRNA
_63
mRNA
_64
mRNA
_65
8429
8430
8431
8432
8433
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
-0.2
-0.3
-0.6
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.0
-0.5
-0.3
-2.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
+0.0
-1.6
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.0
+0.3
-0.8
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
-0.3
-0.8
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.4
+0.0
-0.8
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.3
+0.5
+0.5
-1.7
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.3
+0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.4
+0.0
-0.5
+0.4
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.1
-0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.1
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-0.4
-0.1
+0.4
growth on ypd
YPD
-0.6
+0.1
+0.5
+0.7
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
-0.0
-0.5
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.0
-0.0
-0.6
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.0
+0.1
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.4
+0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
+0.0
+0.1
+0.2
auxotrophy
Dropout Complete
-0.2
+0.2
+0.2
-0.0
+1.4
auxotrophy
YNB Glucose
-0.1
+0.1
+0.0
+0.4
+1.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
+0.2
+0.4
+1.1
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