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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8432 and 8433 are separated by 147 nucleotides
8433 and 8434 are separated by 88 nucleotides
8434 and 8435 are separated by 272 nucleotides
8435 and 8436 are separated by 564 nucleotides
mRNA_64: 8432 - HMMPfam-Transcription initiation factor TFIID component TAF4 family-PF05236, at 148,573 to 150,625
8432
mRNA_65: 8433 - K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1, at 150,773 to 154,577
8433
mRNA_66: 8434 - K15118 SLC25A38 solute carrier family 25, member 38, at 154,666 to 156,000
8434
mRNA_67: 8435 - K05864 PPID, CYPD peptidyl-prolyl isomerase D, at 156,273 to 158,120
8435
mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158,685 to 163,751
8436
Group
Condition
mRNA
_64
mRNA
_65
mRNA
_66
mRNA
_67
mRNA
_68
8432
8433
8434
8435
8436
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-2.1
-0.8
-0.1
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.6
-0.7
-1.2
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
-1.1
-0.5
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.4
-0.7
+0.1
-1.3
growth on oleic acid
YNB Glucose
-0.0
-0.4
-0.2
+0.1
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
-0.5
+0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+0.2
-0.1
+0.0
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.6
-0.5
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-0.1
+0.2
-0.9
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.6
-0.1
-0.1
-1.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.4
-0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-1.7
+0.5
-0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-1.3
+0.4
-0.2
+1.3
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.4
-0.1
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+1.1
-0.3
-0.3
-0.9
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.2
-0.2
-0.1
-0.1
auxotrophy
Dropout Complete
-0.0
+1.4
-0.2
+0.1
-0.9
growth on ricinoleic acid
YNB Glucose
-0.5
+1.1
+0.5
-0.0
-0.7
auxotrophy
YNB Glucose
+0.4
+1.3
-0.1
-0.2
-0.7
growth on ypd
YPD
+0.7
-0.3
+0.4
+0.3
+0.6
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