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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8435 and 8436 are separated by 564 nucleotides
8436 and 8437 are separated by 196 nucleotides
8437 and 8438 are separated by 202 nucleotides
8438 and 8439 are separated by 490 nucleotides
mRNA_67: 8435 - K05864 PPID, CYPD peptidyl-prolyl isomerase D, at 156,273 to 158,120
8435
mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158,685 to 163,751
8436
mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163,948 to 165,826
8437
mRNA_70: 8438 - HMMPfam-Membrane-associating domain-PF01284, at 166,029 to 167,085
8438
mRNA_71: 8439 - HMMPfam-YABBY protein-PF04690,SUPERFAMILY--SSF47095, at 167,576 to 168,117
8439
Group
Condition
mRNA
_67
mRNA
_68
mRNA
_69
mRNA
_70
mRNA
_71
8435
8436
8437
8438
8439
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.3
-0.3
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.9
-0.3
+0.5
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.9
-0.2
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.9
-0.1
+0.8
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-1.1
-0.2
+0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.9
-0.2
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose
-0.2
-0.7
-0.1
+0.8
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.7
-0.0
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.4
+0.6
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.6
+0.0
+0.7
N.D.
auxotrophy
Dropout Complete
+0.1
-0.9
+0.1
+1.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
-0.2
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.3
-1.1
+1.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
-0.3
+0.8
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+1.3
+0.1
-0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.3
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
+0.4
+0.8
N.D.
growth on ypd
YPD
+0.3
+0.6
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.2
+0.6
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.0
-0.1
+1.2
N.D.
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